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Lj5g3v1774920.2

Overview

Field Value
Gene ID Lj5g3v1774920
Transcript ID Lj5g3v1774920.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: R3H domain-containing protein 2-like [Cicer arietinum] gi|502118292|ref|XP_004496195.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15672
6 452 447 1.00E-134 –
MobiDBLite
mobidb-lite
31 52 22 – –
SUPERFAMILY
SSF82708
53 178 126 2.75E-26
IPR001374
SMART
SM00393
58 142 85 6.10E-04
IPR001374
CDD
cd02642
73 142 70 6.16E-20 –
ProSiteProfiles
PS51061
74 143 70 11.613
IPR001374
Gene3D
G3DSA:3.30.1370.50
77 144 68 1.50E-13
IPR001374
Pfam
PF01424
77 124 48 1.40E-12
IPR001374
ProSiteProfiles
PS51673
147 218 72 13.492
IPR024771
Pfam
PF12752
168 218 51 3.80E-12
IPR024771
MobiDBLite
mobidb-lite
172 286 115 – –
Coils
Coil
189 209 21 – –
MobiDBLite
mobidb-lite
432 453 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj5g3v1774920.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1774920.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.