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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1827320 |
| Transcript ID | Lj5g3v1827320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera] gi|359484317|ref|XP_003633097.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 48 | 79 | 32 | – | – | |
| PANTHER | 90 | 404 | 315 | 0 | – | |
| PANTHER | 90 | 404 | 315 | 0 | – | |
| ProSiteProfiles | 101 | 135 | 35 | 5.766 | ||
| ProSiteProfiles | 136 | 166 | 31 | 9.01 | ||
| Pfam | 140 | 166 | 27 | 0.0021 | ||
| TIGRFAM | 140 | 169 | 30 | 0.002 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.992 | ||
| Pfam | 167 | 213 | 47 | 2.80E-10 | ||
| Gene3D | 168 | 198 | 31 | 3.90E-04 | ||
| TIGRFAM | 169 | 202 | 34 | 2.00E-06 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.108 | ||
| ProSiteProfiles | 237 | 267 | 31 | 7.169 | ||
| Pfam | 242 | 266 | 25 | 0.059 | ||
| Pfam | 268 | 315 | 48 | 4.80E-09 | ||
| ProSiteProfiles | 268 | 302 | 35 | 9.372 | ||
| ProSiteProfiles | 303 | 337 | 35 | 7.355 | ||
| ProSiteProfiles | 338 | 368 | 31 | 6.018 | ||
| Pfam | 343 | 363 | 21 | 0.41 | ||
| Gene3D | 367 | 421 | 55 | 3.90E-04 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.893 | ||
| Pfam | 369 | 414 | 46 | 2.40E-11 | ||
| TIGRFAM | 371 | 405 | 35 | 4.40E-06 | ||
| ProSiteProfiles | 404 | 438 | 35 | 5.678 | ||
| ProSiteProfiles | 439 | 469 | 31 | 6.467 | ||
| ProSiteProfiles | 470 | 504 | 35 | 8.166 | ||
| ProSiteProfiles | 505 | 539 | 35 | 5.963 | ||
| ProSiteProfiles | 540 | 570 | 31 | 5.952 | ||
| PANTHER | 541 | 850 | 310 | 0 | – | |
| PANTHER | 541 | 850 | 310 | 0 | – | |
| Pfam | 571 | 617 | 47 | 3.50E-09 | ||
| ProSiteProfiles | 571 | 605 | 35 | 11.422 | ||
| TIGRFAM | 573 | 607 | 35 | 7.70E-07 | ||
| ProSiteProfiles | 606 | 640 | 35 | 5.141 | ||
| ProSiteProfiles | 641 | 671 | 31 | 7.443 | ||
| Gene3D | 644 | 703 | 60 | 3.90E-04 | ||
| Pfam | 646 | 668 | 23 | 0.29 | ||
| Pfam | 672 | 719 | 48 | 1.30E-11 | ||
| ProSiteProfiles | 672 | 706 | 35 | 12.068 | ||
| TIGRFAM | 674 | 708 | 35 | 3.30E-08 | ||
| ProSiteProfiles | 707 | 742 | 36 | 7.18 | ||
| ProSiteProfiles | 743 | 777 | 35 | 6.873 | ||
| Pfam | 747 | 771 | 25 | 0.42 | ||
| Gene3D | 773 | 829 | 57 | 3.90E-04 | ||
| ProSiteProfiles | 809 | 843 | 35 | 7.87 | ||
| Pfam | 845 | 968 | 124 | 1.40E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v1827320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1827320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.