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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1889580 |
| Transcript ID | Lj5g3v1889580.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polyadenylate-binding protein 3-like isoform X2 [Cicer arietinum] gi|502118843|ref|XP_004496416.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| PANTHER | 36 | 155 | 120 | 2.30E-150 | – | |
| PANTHER | 36 | 155 | 120 | 2.30E-150 | – | |
| Gene3D | 38 | 118 | 81 | 3.50E-25 | ||
| ProSiteProfiles | 39 | 117 | 79 | 17.131 | ||
| SUPERFAMILY | 39 | 206 | 168 | 1.29E-46 | ||
| TIGRFAM | 39 | 638 | 600 | 1.10E-225 | ||
| SMART | 40 | 113 | 74 | 4.80E-21 | ||
| CDD | 40 | 119 | 80 | 3.02E-41 | – | |
| SMART | 40 | 113 | 74 | 2.5 | ||
| Pfam | 41 | 111 | 71 | 4.70E-17 | ||
| Gene3D | 122 | 207 | 86 | 1.70E-25 | ||
| CDD | 125 | 200 | 76 | 2.67E-46 | – | |
| ProSiteProfiles | 127 | 204 | 78 | 18.444 | ||
| SMART | 128 | 200 | 73 | 3.3 | ||
| SMART | 128 | 200 | 73 | 1.60E-24 | ||
| Pfam | 129 | 197 | 69 | 1.10E-20 | ||
| Gene3D | 208 | 302 | 95 | 7.20E-27 | ||
| SUPERFAMILY | 217 | 402 | 186 | 1.01E-48 | ||
| CDD | 217 | 297 | 81 | 1.47E-37 | – | |
| ProSiteProfiles | 218 | 296 | 79 | 18.7 | ||
| SMART | 219 | 292 | 74 | 3.60E-26 | ||
| SMART | 219 | 291 | 73 | 1.1 | ||
| Pfam | 220 | 287 | 68 | 2.10E-24 | ||
| Coils | 291 | 319 | 29 | – | – | |
| Gene3D | 317 | 405 | 89 | 2.00E-29 | ||
| PANTHER | 321 | 507 | 187 | 2.30E-150 | – | |
| PANTHER | 321 | 507 | 187 | 2.30E-150 | – | |
| CDD | 321 | 399 | 79 | 6.38E-46 | – | |
| ProSiteProfiles | 322 | 399 | 78 | 19.536 | ||
| SMART | 323 | 395 | 73 | 0.66 | ||
| SMART | 323 | 395 | 73 | 4.20E-25 | ||
| Pfam | 324 | 392 | 69 | 3.00E-20 | ||
| SUPERFAMILY | 475 | 517 | 43 | 2.62E-25 | ||
| MobiDBLite | 486 | 514 | 29 | – | – | |
| ProSiteProfiles | 564 | 642 | 79 | 18.819 | ||
| Gene3D | 566 | 641 | 76 | 6.70E-26 | ||
| SUPERFAMILY | 568 | 643 | 76 | 2.62E-25 | ||
| Pfam | 570 | 637 | 68 | 1.50E-23 | ||
| SMART | 576 | 640 | 65 | 2.20E-32 | ||
| PANTHER | 577 | 621 | 45 | 2.30E-150 | – | |
| PANTHER | 577 | 621 | 45 | 2.30E-150 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj5g3v1889580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1889580.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.