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Lj5g3v1960110.1

Overview

Field Value
Gene ID Lj5g3v1960110
Transcript ID Lj5g3v1960110.1
Lotus japonicus genome version MG20 v3.0
Description Receptor-like kinase [Medicago truncatula] gi|358345602|ref|XP_003636865.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 172 172 – –
PANTHER
PTHR27004
6 216 211 6.50E-101 –
PANTHER
PTHR27004:SF27
6 216 211 6.50E-101 –
SUPERFAMILY
SSF52058
16 138 123 1.70E-27
IPR032675
Pfam
PF13516
30 45 16 0.3
IPR001611
Gene3D
G3DSA:3.80.10.10
31 143 113 1.00E-29
IPR032675
PRINTS
PR00019
32 45 14 3.40E-06 –
Pfam
PF13516
54 74 21 0.085
IPR001611
Pfam
PF13855
75 114 40 7.20E-07
IPR001611
PRINTS
PR00019
77 90 14 3.40E-06 –
TMHMM
TMhelix
173 195 23 – –
Phobius
TRANSMEMBRANE
173 195 23 – –
Phobius
CYTOPLASMIC_DOMAIN
196 219 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj5g3v1960110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1960110.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.