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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1986500 |
| Transcript ID | Lj5g3v1986500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like [Glycine max] gi|356534091|ref|XP_003535591.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 148 | 111 | 0 | – | |
| PANTHER | 38 | 148 | 111 | 0 | – | |
| ProSiteProfiles | 49 | 79 | 31 | 6.336 | ||
| Pfam | 80 | 126 | 47 | 9.00E-09 | ||
| ProSiteProfiles | 80 | 114 | 35 | 10.698 | ||
| TIGRFAM | 82 | 116 | 35 | 3.50E-05 | ||
| ProSiteProfiles | 115 | 149 | 35 | 5.908 | ||
| Pfam | 181 | 224 | 44 | 1.00E-08 | ||
| ProSiteProfiles | 181 | 215 | 35 | 11.915 | ||
| TIGRFAM | 183 | 217 | 35 | 7.50E-08 | ||
| Gene3D | 188 | 211 | 24 | 7.40E-08 | ||
| PANTHER | 249 | 418 | 170 | 0 | – | |
| PANTHER | 249 | 418 | 170 | 0 | – | |
| ProSiteProfiles | 250 | 280 | 31 | 5.382 | ||
| ProSiteProfiles | 281 | 315 | 35 | 9.416 | ||
| Pfam | 281 | 326 | 46 | 1.40E-09 | ||
| TIGRFAM | 284 | 316 | 33 | 0.0011 | ||
| ProSiteProfiles | 316 | 350 | 35 | 5.031 | ||
| Pfam | 382 | 429 | 48 | 1.30E-10 | ||
| ProSiteProfiles | 383 | 417 | 35 | 11.455 | ||
| TIGRFAM | 385 | 419 | 35 | 1.20E-05 | ||
| ProSiteProfiles | 418 | 452 | 35 | 5.24 | ||
| ProSiteProfiles | 453 | 483 | 31 | 8.057 | ||
| PANTHER | 454 | 744 | 291 | 0 | – | |
| PANTHER | 454 | 744 | 291 | 0 | – | |
| Pfam | 458 | 481 | 24 | 0.0097 | ||
| Gene3D | 479 | 515 | 37 | 7.40E-08 | ||
| ProSiteProfiles | 484 | 518 | 35 | 8.429 | ||
| ProSiteProfiles | 519 | 553 | 35 | 5.042 | ||
| Gene3D | 552 | 718 | 167 | 7.40E-08 | ||
| ProSiteProfiles | 554 | 588 | 35 | 6.829 | ||
| Pfam | 559 | 582 | 24 | 0.11 | ||
| ProSiteProfiles | 601 | 631 | 31 | 8.561 | ||
| Pfam | 603 | 630 | 28 | 0.0025 | ||
| ProSiteProfiles | 637 | 667 | 31 | 6.665 | ||
| Pfam | 641 | 664 | 24 | 0.26 | ||
| ProSiteProfiles | 703 | 737 | 35 | 6.226 | ||
| Pfam | 739 | 849 | 111 | 1.10E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v1986500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1986500.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.