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Lj5g3v1988630.1

Overview

Field Value
Gene ID Lj5g3v1988630
Transcript ID Lj5g3v1988630.1
Lotus japonicus genome version MG20 v3.0
Description Receptor protein kinase-like protein, partial [Medicago truncatula] gi|357444031|ref|XP_003592293.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 40 40 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 19 19 – –
PANTHER
PTHR27004
19 328 310 6.40E-74 –
Phobius
SIGNAL_PEPTIDE_H_REGION
20 35 16 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
36 40 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
41 329 289 – –
Gene3D
G3DSA:3.80.10.10
48 109 62 2.20E-36
IPR032675
Pfam
PF08263
52 89 38 5.50E-13
IPR013210
SUPERFAMILY
SSF52047
139 326 188 8.63E-30 –
Gene3D
G3DSA:3.80.10.10
144 328 185 2.20E-36
IPR032675
Pfam
PF00560
291 312 22 0.72
IPR001611

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj5g3v1988630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1988630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.