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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2029600 |
| Transcript ID | Lj5g3v2029600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g14330-like [Glycine max] gi|356523117|ref|XP_003530188.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| ProSiteProfiles | 29 | 63 | 35 | 5.612 | ||
| PANTHER | 32 | 511 | 480 | 6.40E-288 | – | |
| PANTHER | 32 | 511 | 480 | 6.40E-288 | – | |
| Pfam | 38 | 54 | 17 | 0.33 | ||
| Gene3D | 99 | 183 | 85 | 2.20E-09 | ||
| ProSiteProfiles | 99 | 129 | 31 | 6.741 | ||
| Pfam | 106 | 124 | 19 | 1.1 | ||
| ProSiteProfiles | 131 | 165 | 35 | 8.813 | ||
| Pfam | 134 | 161 | 28 | 0.021 | ||
| TIGRFAM | 134 | 165 | 32 | 0.003 | ||
| ProSiteProfiles | 201 | 231 | 31 | 6.96 | ||
| ProSiteProfiles | 232 | 262 | 31 | 8.21 | ||
| Pfam | 234 | 260 | 27 | 0.014 | ||
| ProSiteProfiles | 268 | 302 | 35 | 5.053 | ||
| ProSiteProfiles | 303 | 333 | 31 | 7.443 | ||
| Pfam | 334 | 381 | 48 | 1.80E-13 | ||
| ProSiteProfiles | 334 | 368 | 35 | 13.274 | ||
| TIGRFAM | 337 | 369 | 33 | 6.40E-10 | ||
| Gene3D | 337 | 364 | 28 | 2.20E-09 | ||
| ProSiteProfiles | 369 | 403 | 35 | 10.523 | ||
| TIGRFAM | 371 | 404 | 34 | 0.0013 | ||
| Gene3D | 402 | 488 | 87 | 2.20E-09 | ||
| ProSiteProfiles | 404 | 434 | 31 | 7.432 | ||
| ProSiteProfiles | 470 | 504 | 35 | 7.399 | ||
| Pfam | 507 | 631 | 125 | 2.50E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v2029600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2029600.1, powered by CORGI.
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