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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2110860 |
| Transcript ID | Lj5g3v2110860.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 377 | 366 | 5.50E-186 | – | |
| PANTHER | 12 | 377 | 366 | 5.50E-186 | – | |
| Gene3D | 17 | 168 | 152 | 2.50E-05 | ||
| ProSiteProfiles | 36 | 70 | 35 | 6.38 | ||
| Pfam | 70 | 118 | 49 | 1.00E-12 | ||
| ProSiteProfiles | 71 | 105 | 35 | 10.468 | ||
| TIGRFAM | 74 | 107 | 34 | 1.60E-05 | ||
| SUPERFAMILY | 80 | 307 | 228 | 1.26E-05 | – | |
| ProSiteProfiles | 106 | 140 | 35 | 10.271 | ||
| TIGRFAM | 108 | 141 | 34 | 4.00E-05 | ||
| ProSiteProfiles | 141 | 175 | 35 | 10.83 | ||
| Pfam | 141 | 189 | 49 | 7.10E-11 | ||
| TIGRFAM | 143 | 176 | 34 | 7.70E-06 | ||
| ProSiteProfiles | 176 | 210 | 35 | 11.005 | ||
| TIGRFAM | 179 | 212 | 34 | 2.70E-07 | ||
| Pfam | 210 | 258 | 49 | 1.50E-16 | ||
| ProSiteProfiles | 211 | 245 | 35 | 12.079 | ||
| TIGRFAM | 213 | 247 | 35 | 1.60E-07 | ||
| Gene3D | 241 | 276 | 36 | 2.50E-05 | ||
| ProSiteProfiles | 246 | 280 | 35 | 12.386 | ||
| TIGRFAM | 248 | 282 | 35 | 3.20E-09 | ||
| Pfam | 280 | 329 | 50 | 6.50E-19 | ||
| ProSiteProfiles | 281 | 315 | 35 | 12.595 | ||
| TIGRFAM | 283 | 317 | 35 | 1.20E-09 | ||
| ProSiteProfiles | 316 | 350 | 35 | 12.211 | ||
| TIGRFAM | 318 | 352 | 35 | 5.80E-09 | ||
| Pfam | 347 | 377 | 31 | 1.90E-11 | ||
| ProSiteProfiles | 351 | 381 | 31 | 9.69 | ||
| TIGRFAM | 353 | 377 | 25 | 2.80E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2110860.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2110860.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.