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Lj5g3v2111950.1

Overview

Field	Value
Gene ID	Lj5g3v2111950
Transcript ID	Lj5g3v2111950.1
Lotus japonicus genome version	MG20 v3.0
Description	RING-H2 finger protein [Glycine max] gi\|351726136\|ref\|NP_001237884.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14155 View details on PTHR14155 Search for proteins/transripts with this domain View external data on PTHR14155	50	63	14	4.80E-47	–
PANTHER	PTHR14155:SF182 View details on PTHR14155:SF182 Search for proteins/transripts with this domain View external data on PTHR14155:SF182	50	63	14	4.80E-47	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	117	143	27	–	–
PANTHER	PTHR14155:SF182 View details on PTHR14155:SF182 Search for proteins/transripts with this domain View external data on PTHR14155:SF182	151	244	94	4.80E-47	–
PANTHER	PTHR14155 View details on PTHR14155 Search for proteins/transripts with this domain View external data on PTHR14155	151	244	94	4.80E-47	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	195	239	45	1.00E-14	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	196	244	49	1.72E-19	–
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	196	241	46	1.46E-09	–
Pfam	PF13639 View details on PF13639 Search for proteins/transripts with this domain View external data on PF13639	196	238	43	3.00E-13	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	197	237	41	3.00E-06	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	197	238	42	12.77	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj5g3v2111950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2111950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.