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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2112050 |
| Transcript ID | Lj5g3v2112050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cicer arietinum] gi|502167778|ref|XP_004514248.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 584 | 542 | 2.70E-297 | – | |
| PANTHER | 43 | 584 | 542 | 2.70E-297 | – | |
| Pfam | 88 | 135 | 48 | 7.40E-11 | ||
| ProSiteProfiles | 89 | 123 | 35 | 8.627 | ||
| TIGRFAM | 93 | 124 | 32 | 0.0022 | ||
| ProSiteProfiles | 124 | 158 | 35 | 7.256 | ||
| ProSiteProfiles | 159 | 190 | 32 | 5.777 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.279 | ||
| Pfam | 195 | 223 | 29 | 8.70E-07 | ||
| TIGRFAM | 195 | 226 | 32 | 1.90E-06 | ||
| Gene3D | 280 | 428 | 149 | 5.80E-05 | ||
| Pfam | 302 | 350 | 49 | 3.10E-07 | ||
| ProSiteProfiles | 302 | 336 | 35 | 9.46 | ||
| TIGRFAM | 306 | 334 | 29 | 4.20E-05 | ||
| ProSiteProfiles | 338 | 372 | 35 | 6.785 | ||
| ProSiteProfiles | 377 | 407 | 31 | 8.353 | ||
| TIGRFAM | 382 | 410 | 29 | 0.0023 | ||
| Pfam | 407 | 454 | 48 | 2.70E-08 | ||
| ProSiteProfiles | 408 | 442 | 35 | 11.597 | ||
| TIGRFAM | 410 | 444 | 35 | 2.00E-06 | ||
| ProSiteProfiles | 443 | 473 | 31 | 6.577 | ||
| ProSiteProfiles | 477 | 507 | 31 | 6.259 | ||
| Gene3D | 491 | 562 | 72 | 5.80E-05 | ||
| ProSiteProfiles | 509 | 539 | 31 | 5.897 | ||
| ProSiteProfiles | 543 | 577 | 35 | 7.256 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2112050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2112050.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.