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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2150470 |
| Transcript ID | Lj5g3v2150470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357444525|ref|XP_003592540.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 77 | 373 | 297 | 3.80E-203 | – | |
| PANTHER | 77 | 373 | 297 | 3.80E-203 | – | |
| ProSiteProfiles | 120 | 150 | 31 | 7.202 | ||
| ProSiteProfiles | 154 | 188 | 35 | 10.358 | ||
| Gene3D | 160 | 219 | 60 | 4.30E-06 | ||
| TIGRFAM | 161 | 188 | 28 | 2.10E-04 | ||
| Pfam | 164 | 186 | 23 | 0.0067 | ||
| SUPERFAMILY | 165 | 219 | 55 | 1.02E-05 | – | |
| ProSiteProfiles | 189 | 223 | 35 | 11.608 | ||
| Pfam | 193 | 234 | 42 | 9.40E-11 | ||
| TIGRFAM | 193 | 224 | 32 | 3.00E-07 | ||
| ProSiteProfiles | 224 | 258 | 35 | 8.133 | ||
| Gene3D | 256 | 320 | 65 | 4.30E-06 | ||
| SUPERFAMILY | 258 | 327 | 70 | 1.02E-05 | – | |
| Pfam | 258 | 305 | 48 | 6.50E-15 | ||
| ProSiteProfiles | 259 | 293 | 35 | 13.581 | ||
| TIGRFAM | 261 | 294 | 34 | 4.40E-10 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.928 | ||
| TIGRFAM | 297 | 328 | 32 | 3.50E-06 | ||
| ProSiteProfiles | 329 | 363 | 35 | 11.4 | ||
| Pfam | 329 | 372 | 44 | 6.30E-11 | ||
| TIGRFAM | 332 | 364 | 33 | 8.50E-06 | ||
| MobiDBLite | 371 | 391 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2150470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2150470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.