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Lj5g3v2166150.1

Overview

Field Value
Gene ID Lj5g3v2166150
Transcript ID Lj5g3v2166150.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] gi|356575632|ref|XP_003555942.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11934:SF7
1 262 262 2.60E-175 –
PANTHER
PTHR11934
1 262 262 2.60E-175
IPR004788
SUPERFAMILY
SSF100950
29 171 143 2.62E-41 –
Hamap
MF_00170
30 260 231 30.1
IPR020672
Gene3D
G3DSA:3.40.50.1360
32 172 141 6.60E-58 –
TIGRFAM
TIGR00021
33 256 224 1.40E-78
IPR004788
CDD
cd01398
33 253 221 1.64E-102
IPR004788
Pfam
PF06026
80 254 175 4.00E-62
IPR004788
SUPERFAMILY
SSF75445
162 243 82 2.35E-19 –
Gene3D
G3DSA:3.30.70.260
173 240 68 1.70E-23 –
SUPERFAMILY
SSF100950
203 213 11 2.62E-41 –
Coils
Coil
259 262 4 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004751
Molecular function Ribose-5-phosphate isomerase activity Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate.
Subterm of
GO:0009052
Biological process Pentose-phosphate shunt, non-oxidative branch The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v2166150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2166150.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.