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Lj5g3v2169560.2

Overview

Field Value
Gene ID Lj5g3v2169560
Transcript ID Lj5g3v2169560.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18934:SF146
48 488 441 0 –
PANTHER
PTHR18934
48 488 441 0 –
SMART
SM00487
283 472 190 3.50E-30
IPR014001
Gene3D
G3DSA:3.40.50.300
286 447 162 2.30E-46
IPR027417
Pfam
PF00270
292 446 155 3.40E-10
IPR011545
SUPERFAMILY
SSF52540
293 477 185 3.70E-53
IPR027417
ProSiteProfiles
PS51192
296 463 168 22.531
IPR014001
CDD
cd00046
303 445 143 1.57E-24 –
PANTHER
PTHR18934:SF146
540 677 138 0 –
PANTHER
PTHR18934
540 677 138 0 –
SUPERFAMILY
SSF52540
542 686 145 3.70E-53
IPR027417
ProSiteProfiles
PS51194
550 691 142 10.997
IPR001650
Pfam
PF00271
552 652 101 3.90E-12
IPR001650
Gene3D
G3DSA:3.40.50.300
554 645 92 7.20E-07
IPR027417
SMART
SM00490
578 687 110 2.50E-04
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 43

Expression data

Expression pattern

Expression pattern of Lj5g3v2169560.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2169560.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.