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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2235530 |
| Transcript ID | Lj5g3v2235530.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Glycine max] gi|356575510|ref|XP_003555883.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 53 | 492 | 440 | 0 | – | |
| PANTHER | 53 | 492 | 440 | 0 | – | |
| ProSiteProfiles | 81 | 115 | 35 | 8.835 | ||
| Pfam | 84 | 110 | 27 | 0.0062 | ||
| Pfam | 114 | 143 | 30 | 0.0024 | ||
| ProSiteProfiles | 116 | 146 | 31 | 5.272 | ||
| ProSiteProfiles | 182 | 212 | 31 | 6.599 | ||
| Pfam | 187 | 211 | 25 | 1 | ||
| Gene3D | 212 | 270 | 59 | 9.80E-08 | ||
| ProSiteProfiles | 213 | 247 | 35 | 10.117 | ||
| Pfam | 215 | 239 | 25 | 8.30E-06 | ||
| TIGRFAM | 215 | 248 | 34 | 5.20E-05 | ||
| ProSiteProfiles | 248 | 282 | 35 | 5.7 | ||
| ProSiteProfiles | 283 | 313 | 31 | 6.062 | ||
| ProSiteProfiles | 314 | 348 | 35 | 11.213 | ||
| Pfam | 314 | 361 | 48 | 1.10E-11 | ||
| TIGRFAM | 316 | 350 | 35 | 2.80E-05 | ||
| ProSiteProfiles | 349 | 384 | 36 | 8.966 | ||
| TIGRFAM | 351 | 385 | 35 | 0.0028 | ||
| Gene3D | 352 | 480 | 129 | 9.80E-08 | ||
| ProSiteProfiles | 385 | 419 | 35 | 7.947 | ||
| Pfam | 388 | 412 | 25 | 0.024 | ||
| ProSiteProfiles | 451 | 485 | 35 | 5.163 | ||
| Pfam | 488 | 611 | 124 | 1.50E-40 | ||
| Coils | 511 | 531 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v2235530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2235530.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.