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Lj5g3v2237580.1

Overview

Field Value
Gene ID Lj5g3v2237580
Transcript ID Lj5g3v2237580.1
Lotus japonicus genome version MG20 v3.0
Description syringolide-induced protein 1-3-1B [Glycine max] gi|351725743|ref|NP_001237103.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 126 126 – –
ProSiteProfiles
PS50090
16 70 55 6.528
IPR017877
SMART
SM00717
20 72 53 0.0015
IPR001005
SUPERFAMILY
SSF46689
22 78 57 6.24E-11
IPR009057
PANTHER
PTHR24078:SF279
22 126 105 5.10E-22 –
PANTHER
PTHR24078
22 126 105 5.10E-22 –
Pfam
PF00249
23 67 45 6.90E-06
IPR001005
Gene3D
G3DSA:1.10.10.60
23 67 45 8.00E-05
IPR009057
CDD
cd00167
24 70 47 7.98E-05 –
MobiDBLite
mobidb-lite
85 119 35 – –
Phobius
TRANSMEMBRANE
127 145 19 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
146 147 2 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v2237580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2237580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.