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Lj5g3v2256170.2

Overview

Field Value
Gene ID Lj5g3v2256170
Transcript ID Lj5g3v2256170.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: coatomer subunit delta-like isoform X1 [Cicer arietinum] gi|502120970|ref|XP_004497143.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 – –
PANTHER
PTHR10121:SF1
1 173 173 3.60E-99 –
PANTHER
PTHR10121
1 173 173 3.60E-99
IPR027059
ProSiteProfiles
PS51072
1 174 174 22.134
IPR028565
CDD
cd09254
2 174 173 5.02E-77 –
SUPERFAMILY
SSF49447
3 160 158 1.57E-15
IPR028565
Pfam
PF00928
4 162 159 4.00E-21
IPR028565
Gene3D
G3DSA:2.60.40.1170
59 145 87 4.60E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of
GO:0030126
Cellular component COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v2256170.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2256170.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.