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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR028565
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 28 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.504s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0126079.1
n.a. FCH domain only protein 1 [Theobroma cacao] gi|508784574|gb|EOY31830.1| chr0 56704480 56707097 +
2 domain predictions
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Lj1g3v2128340.1
n.a. PREDICTED: AP-4 complex subunit mu-like [Glycine max] gi|356510108|ref|XP_003523782.1| chr1 25625550 25630061 -
4 domain predictions
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Lj1g3v2128340.2
n.a. PREDICTED: AP-4 complex subunit mu-like [Glycine max] gi|356510108|ref|XP_003523782.1| chr1 25625550 25629467 -
4 domain predictions
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Lj1g3v4790740.1
n.a. PREDICTED: AP-3 complex subunit mu-1-like [Cicer arietinum] gi|502113052|ref|XP_004494527.1| chr1 57719058 57721595 -
4 domain predictions
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Lj2g3v1415400.1
n.a. PREDICTED: AP-1 complex subunit mu-1-like [Glycine max] gi|356497456|ref|XP_003517576.1| chr2 22438947 22442672 -
4 domain predictions
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Lj2g3v1984990.1
n.a. PREDICTED: AP-2 complex subunit mu-like [Cicer arietinum] gi|502160553|ref|XP_004511783.1| chr2 29263720 29269531 +
4 domain predictions
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Lj4g3v1083800.1
n.a. PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] gi|356501761|ref|XP_003519692.1| chr4 15577947 15581761 +
4 domain predictions
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Lj5g3v2237630.1
n.a. Coatomer subunit delta-3 [Medicago truncatula] gi|357454817|ref|XP_003597689.1| chr5 32103103 32108569 -
4 domain predictions
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Lj5g3v2237630.2
n.a. Coatomer subunit delta-3 [Medicago truncatula] gi|357454817|ref|XP_003597689.1| chr5 32103949 32108234 -
4 domain predictions
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Lj5g3v2256170.2
n.a. PREDICTED: coatomer subunit delta-like isoform X1 [Cicer arietinum] gi|502120970|ref|XP_004497143.1| chr5 32627654 32628811 +
4 domain predictions
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Lj6g3v1618410.1
n.a. PREDICTED: AP-4 complex subunit mu-1-like isoform 1 [Glycine max] gi|356552963|ref|XP_003544829.1| chr6 18276128 18284966 -
4 domain predictions
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LotjaGi1g1v0137900.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|V7B6Q9|V7B6Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0137900 LjG1.1_chr1 22509403 22517521 +
3 domain predictions
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LotjaGi1g1v0422200.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|I1JT85|I1JT85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422200 LjG1.1_chr1 91633578 91638641 -
3 domain predictions
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LotjaGi1g1v0748800.1
n.a. AP-3 complex subunit mu; TAIR: AT1G56590.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|F4I562|AP3M_ARATH AP-3 complex subunit mu; TrEMBL-Plants: tr|A0A0B2P3M3|A0A0B2P3M3_GLYSO AP-3 complex subunit mu-1; Found in the gene: LotjaGi1g1v0748800 LjG1.1_chr1 132127509 132132140 -
3 domain predictions
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LotjaGi1g1v0748800.2
n.a. AP-3 complex subunit mu; TAIR: AT1G56590.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|F4I562|AP3M_ARATH AP-3 complex subunit mu; TrEMBL-Plants: tr|A0A151TW96|A0A151TW96_CAJCA AP-3 complex subunit mu-1; Found in the gene: LotjaGi1g1v0748800 LjG1.1_chr1 132129817 132131954 -
3 domain predictions
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LotjaGi2g1v0323900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1J553|I1J553_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323900 LjG1.1_chr2 79899541 79906354 -
3 domain predictions
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LotjaGi2g1v0415100.1
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297033 91303278 +
3 domain predictions
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LotjaGi2g1v0415100.2
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|A0A0R0JTT3|A0A0R0JTT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
3 domain predictions
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LotjaGi2g1v0415100.3
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
3 domain predictions
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LotjaGi2g1v0415100.4
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
3 domain predictions
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LotjaGi4g1v0156900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1N1K1|I1N1K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0156900 LjG1.1_chr4 27295873 27304320 -
3 domain predictions
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LotjaGi4g1v0300500.1
n.a. FCH domain only protein 1; TAIR: AT5G57460.1 muniscin carboxy-terminal mu-like domain protein; Swiss-Prot: sp|Q502I9|FCHO2_DANRE F-BAR domain only protein 2; TrEMBL-Plants: tr|I1MSR1|I1MSR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0300500 LjG1.1_chr4 67465376 67472917 +
2 domain predictions
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LotjaGi4g1v0348900.1
n.a. Ap-5 complex subunit mu; TAIR: AT2G20790.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q8W0Z6|AP5M_ARATH AP-5 complex subunit mu; TrEMBL-Plants: tr|A0A151STS3|A0A151STS3_CAJCA MHD domain-containing death-inducing protein; Found in the gene: LotjaGi4g1v0348900 LjG1.1_chr4 72769040 72774860 -
3 domain predictions
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LotjaGi5g1v0343900.1
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|G7II11|G7II11_MEDTR Coatomer subunit delta-like protein; Found in the gene: LotjaGi5g1v0343900 LjG1.1_chr5 66092734 66098168 -
3 domain predictions
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LotjaGi5g1v0343900.2
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|G7II11|G7II11_MEDTR Coatomer subunit delta-like protein; Found in the gene: LotjaGi5g1v0343900 LjG1.1_chr5 66093233 66096871 -
3 domain predictions
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LotjaGi5g1v0350800.1
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66661466 66666939 +
3 domain predictions
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LotjaGi5g1v0350800.2
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66662676 66666668 +
3 domain predictions
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LotjaGi5g1v0350800.3
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66662936 66666668 +
3 domain predictions
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