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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2256180 |
| Transcript ID | Lj5g3v2256180.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: hippocampus abundant transcript 1 protein-like [Cicer arietinum] gi|502121138|ref|XP_004497200.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 438 | 438 | 3.60E-226 | – | |
| PANTHER | 1 | 438 | 438 | 3.60E-226 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| ProSiteProfiles | 8 | 432 | 425 | 11.93 | ||
| TMHMM | 9 | 31 | 23 | – | – | |
| Pfam | 12 | 196 | 185 | 3.10E-17 | ||
| CDD | 12 | 422 | 411 | 3.28E-12 | ||
| SUPERFAMILY | 12 | 428 | 417 | 7.98E-38 | ||
| Phobius | 12 | 35 | 24 | – | – | |
| Gene3D | 12 | 194 | 183 | 2.30E-18 | – | |
| Phobius | 36 | 46 | 11 | – | – | |
| Phobius | 47 | 70 | 24 | – | – | |
| TMHMM | 51 | 73 | 23 | – | – | |
| Phobius | 71 | 81 | 11 | – | – | |
| Phobius | 82 | 100 | 19 | – | – | |
| Phobius | 101 | 106 | 6 | – | – | |
| Phobius | 107 | 132 | 26 | – | – | |
| TMHMM | 109 | 131 | 23 | – | – | |
| Phobius | 133 | 143 | 11 | – | – | |
| TMHMM | 141 | 163 | 23 | – | – | |
| Phobius | 144 | 163 | 20 | – | – | |
| Phobius | 164 | 169 | 6 | – | – | |
| Phobius | 170 | 190 | 21 | – | – | |
| TMHMM | 170 | 189 | 20 | – | – | |
| Phobius | 191 | 248 | 58 | – | – | |
| Gene3D | 244 | 419 | 176 | 1.30E-12 | – | |
| TMHMM | 249 | 271 | 23 | – | – | |
| Phobius | 249 | 271 | 23 | – | – | |
| Phobius | 272 | 282 | 11 | – | – | |
| TMHMM | 283 | 305 | 23 | – | – | |
| Phobius | 283 | 305 | 23 | – | – | |
| Phobius | 306 | 324 | 19 | – | – | |
| TMHMM | 325 | 347 | 23 | – | – | |
| Phobius | 325 | 349 | 25 | – | – | |
| Phobius | 350 | 368 | 19 | – | – | |
| TMHMM | 368 | 390 | 23 | – | – | |
| Phobius | 369 | 388 | 20 | – | – | |
| Phobius | 389 | 407 | 19 | – | – | |
| TMHMM | 405 | 427 | 23 | – | – | |
| Phobius | 408 | 427 | 20 | – | – | |
| Phobius | 428 | 448 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v2256180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2256180.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.