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Lj5g3v2258500.1

Overview

Field Value
Gene ID Lj5g3v2258500
Transcript ID Lj5g3v2258500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like isoform 1 [Glycine max] gi|356575432|ref|XP_003555845.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 96 96 – –
Coils
Coil
47 67 21 – –
PANTHER
PTHR14155:SF166
92 128 37 5.30E-75 –
PANTHER
PTHR14155
92 128 37 5.30E-75 –
MobiDBLite
mobidb-lite
123 166 44 – –
PANTHER
PTHR14155
238 341 104 5.30E-75 –
PANTHER
PTHR14155:SF166
238 341 104 5.30E-75 –
SUPERFAMILY
SSF57850
284 338 55 1.55E-18 –
Gene3D
G3DSA:3.30.40.10
289 337 49 9.20E-16
IPR013083
CDD
cd00162
293 337 45 2.25E-10 –
ProSiteProfiles
PS50089
293 334 42 11.707
IPR001841
Pfam
PF13639
293 333 41 5.40E-11
IPR001841
SMART
SM00184
293 333 41 7.50E-05
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj5g3v2258500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2258500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.