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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2258540 |
| Transcript ID | Lj5g3v2258540.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g59040-like [Cicer arietinum] gi|502121233|ref|XP_004497232.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 52 | 532 | 481 | 1.80E-266 | – | |
| PANTHER | 52 | 532 | 481 | 1.80E-266 | – | |
| ProSiteProfiles | 105 | 139 | 35 | 9.153 | ||
| Pfam | 111 | 136 | 26 | 0.0075 | ||
| TIGRFAM | 111 | 141 | 31 | 2.40E-05 | ||
| Pfam | 139 | 186 | 48 | 1.90E-08 | ||
| ProSiteProfiles | 140 | 174 | 35 | 11.148 | ||
| TIGRFAM | 143 | 175 | 33 | 9.90E-06 | ||
| Gene3D | 146 | 413 | 268 | 2.30E-13 | ||
| SUPERFAMILY | 151 | 243 | 93 | 1.44E-11 | – | |
| ProSiteProfiles | 175 | 209 | 35 | 8.89 | ||
| Pfam | 212 | 256 | 45 | 3.00E-07 | ||
| ProSiteProfiles | 213 | 247 | 35 | 10.194 | ||
| TIGRFAM | 216 | 246 | 31 | 5.70E-06 | ||
| SUPERFAMILY | 279 | 312 | 34 | 1.44E-11 | – | |
| Pfam | 279 | 326 | 48 | 6.20E-12 | ||
| ProSiteProfiles | 280 | 314 | 35 | 13.285 | ||
| TIGRFAM | 282 | 315 | 34 | 7.20E-09 | ||
| ProSiteProfiles | 315 | 349 | 35 | 10.643 | ||
| TIGRFAM | 318 | 350 | 33 | 8.40E-07 | ||
| SUPERFAMILY | 349 | 451 | 103 | 1.44E-11 | – | |
| Pfam | 349 | 398 | 50 | 7.90E-12 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.918 | ||
| TIGRFAM | 353 | 386 | 34 | 1.10E-05 | ||
| ProSiteProfiles | 385 | 419 | 35 | 11.751 | ||
| TIGRFAM | 387 | 420 | 34 | 1.20E-07 | ||
| ProSiteProfiles | 420 | 454 | 35 | 10.49 | ||
| Pfam | 425 | 451 | 27 | 4.20E-04 | ||
| TIGRFAM | 425 | 455 | 31 | 3.40E-07 | ||
| MobiDBLite | 490 | 524 | 35 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2258540.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2258540.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.