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Lj5g3v2259690.2

Overview

Field	Value
Gene ID	Lj5g3v2259690
Transcript ID	Lj5g3v2259690.2
Related isoforms 1	Lj5g3v2259690.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Glycine max] gi\|356575409\|ref\|XP_003555834.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR22763 View details on PTHR22763 Search for proteins/transripts with this domain View external data on PTHR22763	1	153	153	3.50E-97	–
PANTHER	PTHR22763:SF62 View details on PTHR22763:SF62 Search for proteins/transripts with this domain View external data on PTHR22763:SF62	1	153	153	3.50E-97	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	84	132	49	2.80E-17	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	87	135	49	2.43E-20	–
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	88	129	42	5.63E-11	–
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	88	129	42	12.297	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13639 View details on PF13639 Search for proteins/transripts with this domain View external data on PF13639	88	129	42	5.20E-13	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	88	128	41	9.10E-09	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	138	157	20	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj5g3v2259690.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2259690.2, powered by CORGI.

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