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Lj5g3v2266290.1

Overview

Field Value
Gene ID Lj5g3v2266290
Transcript ID Lj5g3v2266290.1
Lotus japonicus genome version MG20 v3.0
Description SNF4b [Medicago truncatula] gi|32364484|gb|AAO61675.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Coils
Coil
29 49 21 – –
PANTHER
PTHR13780
43 100 58 8.50E-163 –
PANTHER
PTHR13780:SF51
43 100 58 8.50E-163 –
SUPERFAMILY
SSF54631
48 200 153 5.18E-10 –
Gene3D
G3DSA:3.10.580.10
55 200 146 2.70E-08 –
ProSiteProfiles
PS51371
60 142 83 5.943
IPR000644
PANTHER
PTHR13780:SF51
122 417 296 8.50E-163 –
PANTHER
PTHR13780
122 417 296 8.50E-163 –
SUPERFAMILY
SSF54631
223 408 186 2.49E-22 –
ProSiteProfiles
PS51371
254 326 73 6.979
IPR000644
Gene3D
G3DSA:3.10.580.10
256 408 153 3.30E-21 –
SMART
SM00116
258 321 64 15
IPR000644
CDD
cd04642
258 405 148 3.97E-32 –
ProSiteProfiles
PS51371
355 414 60 11.726
IPR000644
Pfam
PF00571
358 406 49 5.30E-10
IPR000644
SMART
SM00116
359 407 49 6.90E-07
IPR000644

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj5g3v2266290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2266290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.