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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0001260 |
| Transcript ID | Lj6g3v0001260.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 213 | 213 | 1.10E-259 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 7.158 | ||
| ProSiteProfiles | 45 | 75 | 31 | 5.842 | ||
| ProSiteProfiles | 78 | 112 | 35 | 10.742 | ||
| Gene3D | 79 | 109 | 31 | 5.20E-13 | ||
| Pfam | 79 | 116 | 38 | 2.80E-07 | ||
| TIGRFAM | 81 | 113 | 33 | 1.50E-06 | ||
| ProSiteProfiles | 113 | 147 | 35 | 6.369 | ||
| ProSiteProfiles | 148 | 177 | 30 | 5.031 | ||
| Gene3D | 176 | 230 | 55 | 5.20E-13 | ||
| Pfam | 177 | 217 | 41 | 1.60E-09 | ||
| ProSiteProfiles | 178 | 212 | 35 | 11.575 | ||
| TIGRFAM | 180 | 214 | 35 | 4.90E-08 | ||
| ProSiteProfiles | 248 | 278 | 31 | 7.092 | ||
| PANTHER | 249 | 558 | 310 | 1.10E-259 | – | |
| Pfam | 279 | 326 | 48 | 1.50E-08 | ||
| ProSiteProfiles | 279 | 313 | 35 | 10.6 | ||
| TIGRFAM | 281 | 314 | 34 | 1.10E-04 | ||
| ProSiteProfiles | 349 | 379 | 31 | 8.1 | ||
| Gene3D | 352 | 400 | 49 | 5.20E-13 | ||
| Pfam | 354 | 379 | 26 | 0.0018 | ||
| TIGRFAM | 354 | 379 | 26 | 8.60E-04 | ||
| ProSiteProfiles | 380 | 414 | 35 | 10.457 | ||
| Pfam | 382 | 427 | 46 | 8.20E-11 | ||
| TIGRFAM | 383 | 416 | 34 | 8.30E-07 | ||
| ProSiteProfiles | 415 | 445 | 31 | 9.525 | ||
| TIGRFAM | 418 | 445 | 28 | 2.50E-04 | ||
| ProSiteProfiles | 451 | 485 | 35 | 8.374 | ||
| Pfam | 453 | 479 | 27 | 0.0017 | ||
| TIGRFAM | 454 | 479 | 26 | 0.0014 | ||
| Gene3D | 459 | 536 | 78 | 5.20E-13 | ||
| ProSiteProfiles | 517 | 551 | 35 | 6.401 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0001260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0001260.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.