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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0002280 |
| Transcript ID | Lj6g3v0002280.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like [Glycine max] gi|356536611|ref|XP_003536830.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 473 | 471 | 3.20E-171 | – | |
| PANTHER | 3 | 473 | 471 | 3.20E-171 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 6.993 | ||
| ProSiteProfiles | 44 | 78 | 35 | 9.613 | ||
| Pfam | 44 | 91 | 48 | 6.30E-09 | ||
| TIGRFAM | 46 | 79 | 34 | 2.40E-05 | ||
| Gene3D | 48 | 77 | 30 | 2.20E-08 | ||
| ProSiteProfiles | 79 | 113 | 35 | 8.418 | ||
| ProSiteProfiles | 114 | 148 | 35 | 7.695 | ||
| Pfam | 116 | 142 | 27 | 0.86 | ||
| Gene3D | 148 | 149 | 2 | 2.20E-08 | ||
| Pfam | 149 | 198 | 50 | 3.20E-18 | ||
| ProSiteProfiles | 150 | 184 | 35 | 12.529 | ||
| TIGRFAM | 152 | 186 | 35 | 2.20E-08 | ||
| ProSiteProfiles | 185 | 211 | 27 | 6.336 | ||
| ProSiteProfiles | 215 | 249 | 35 | 11.696 | ||
| Pfam | 215 | 262 | 48 | 6.50E-15 | ||
| TIGRFAM | 218 | 251 | 34 | 1.70E-08 | ||
| ProSiteProfiles | 250 | 284 | 35 | 12.54 | ||
| TIGRFAM | 252 | 286 | 35 | 1.00E-10 | ||
| Gene3D | 253 | 316 | 64 | 2.20E-08 | ||
| Pfam | 284 | 333 | 50 | 7.50E-17 | ||
| ProSiteProfiles | 285 | 319 | 35 | 12.627 | ||
| TIGRFAM | 288 | 321 | 34 | 2.00E-08 | ||
| ProSiteProfiles | 320 | 354 | 35 | 11.049 | ||
| Gene3D | 385 | 453 | 69 | 2.20E-08 | ||
| Pfam | 386 | 435 | 50 | 8.60E-15 | ||
| ProSiteProfiles | 387 | 421 | 35 | 12.529 | ||
| TIGRFAM | 390 | 422 | 33 | 7.50E-11 | ||
| ProSiteProfiles | 422 | 452 | 31 | 7.75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0002280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0002280.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.