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Lj6g3v0025640.1

Overview

Field Value
Gene ID Lj6g3v0025640
Transcript ID Lj6g3v0025640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyanate hydratase-like [Cicer arietinum] gi|502123007|ref|XP_004497968.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_00535
1 164 164 53.165
IPR008076
PIRSF
PIRSF001263
1 150 150 1.30E-61
IPR008076
PANTHER
PTHR34186
4 161 158 2.80E-111 –
PANTHER
PTHR34186:SF1
4 161 158 2.80E-111 –
Gene3D
G3DSA:1.10.260.40
5 81 77 7.50E-16
IPR010982
SUPERFAMILY
SSF47413
9 80 72 6.75E-12
IPR010982
CDD
cd00093
11 66 56 3.69E-04 –
TIGRFAM
TIGR00673
12 147 136 1.80E-34
IPR008076
PRINTS
PR01693
16 31 16 6.40E-36
IPR008076
PRINTS
PR01693
36 53 18 6.40E-36
IPR008076
SMART
SM01116
77 150 74 1.10E-39
IPR003712
Pfam
PF02560
82 148 67 2.90E-29
IPR003712
Gene3D
G3DSA:3.30.1160.10
84 148 65 7.70E-30
IPR003712
SUPERFAMILY
SSF55234
84 149 66 5.62E-27
IPR003712
PRINTS
PR01693
85 99 15 6.40E-36
IPR008076
PRINTS
PR01693
103 119 17 6.40E-36
IPR008076
PRINTS
PR01693
135 145 11 6.40E-36
IPR008076

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008824
Molecular function Cyanate hydratase activity Catalysis of the reaction: cyanate + H2O = carbamate.
Subterm of
GO:0009439
Biological process Cyanate metabolic process The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid.
Subterm of

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj6g3v0025640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0025640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.