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Lj6g3v0029920.1

Overview

Field Value
Gene ID Lj6g3v0029920
Transcript ID Lj6g3v0029920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356498363|ref|XP_003518022.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF650
1 213 213 4.70E-117 –
PANTHER
PTHR10641
1 213 213 4.70E-117 –
Gene3D
G3DSA:1.10.10.60
5 64 60 5.70E-27
IPR009057
ProSiteProfiles
PS51294
9 61 53 17.889
IPR017930
SUPERFAMILY
SSF46689
11 108 98 8.24E-32
IPR009057
SMART
SM00717
13 63 51 2.40E-15
IPR001005
Pfam
PF00249
14 61 48 1.60E-17
IPR001005
CDD
cd00167
16 61 46 2.60E-11 –
ProSiteProfiles
PS51294
62 116 55 26.053
IPR017930
Gene3D
G3DSA:1.10.10.60
65 116 52 1.60E-26
IPR009057
SMART
SM00717
66 114 49 6.20E-16
IPR001005
Pfam
PF00249
67 112 46 6.30E-16
IPR001005
CDD
cd00167
69 112 44 7.47E-11 –
MobiDBLite
mobidb-lite
112 156 45 – –
MobiDBLite
mobidb-lite
185 215 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v0029920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0029920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.