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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0062040 |
| Transcript ID | Lj6g3v0062040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357440933|ref|XP_003590744.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 94 | 89 | 6.30E-04 | ||
| PANTHER | 16 | 74 | 59 | 1.10E-240 | – | |
| PANTHER | 16 | 74 | 59 | 1.10E-240 | – | |
| ProSiteProfiles | 39 | 69 | 31 | 5.163 | ||
| ProSiteProfiles | 70 | 100 | 31 | 6.347 | ||
| Pfam | 75 | 95 | 21 | 0.051 | ||
| ProSiteProfiles | 103 | 137 | 35 | 11.279 | ||
| Pfam | 103 | 148 | 46 | 6.40E-11 | ||
| TIGRFAM | 105 | 138 | 34 | 2.00E-06 | ||
| PANTHER | 108 | 172 | 65 | 1.10E-240 | – | |
| PANTHER | 108 | 172 | 65 | 1.10E-240 | – | |
| PANTHER | 215 | 411 | 197 | 1.10E-240 | – | |
| PANTHER | 215 | 411 | 197 | 1.10E-240 | – | |
| ProSiteProfiles | 216 | 246 | 31 | 7.947 | ||
| TIGRFAM | 219 | 243 | 25 | 0.0011 | ||
| Pfam | 219 | 243 | 25 | 6.80E-04 | ||
| ProSiteProfiles | 247 | 281 | 35 | 11.608 | ||
| Pfam | 248 | 292 | 45 | 3.10E-15 | ||
| TIGRFAM | 249 | 283 | 35 | 2.60E-10 | ||
| Gene3D | 250 | 277 | 28 | 6.30E-04 | ||
| ProSiteProfiles | 282 | 316 | 35 | 7.651 | ||
| Gene3D | 315 | 347 | 33 | 6.30E-04 | ||
| ProSiteProfiles | 321 | 351 | 31 | 6.741 | ||
| Pfam | 326 | 351 | 26 | 0.0041 | ||
| ProSiteProfiles | 352 | 386 | 35 | 10.358 | ||
| Pfam | 354 | 383 | 30 | 1.30E-04 | ||
| TIGRFAM | 354 | 383 | 30 | 3.60E-04 | ||
| TIGRFAM | 386 | 411 | 26 | 2.50E-04 | ||
| Pfam | 386 | 411 | 26 | 4.80E-06 | ||
| ProSiteProfiles | 387 | 411 | 25 | 6.741 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0062040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0062040.1, powered by CORGI.
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