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Lj6g3v0108680.1

Overview

Field Value
Gene ID Lj6g3v0108680
Transcript ID Lj6g3v0108680.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable pectate lyase 15-like [Fragaria vesca subsp]. vesca] gi|470106762|ref|XP_004289729.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31683
1 372 372 0 –
PANTHER
PTHR31683:SF20
1 372 372 0 –
SUPERFAMILY
SSF51126
3 366 364 1.17E-104
IPR011050
Gene3D
G3DSA:2.160.20.10
24 364 341 1.50E-134
IPR012334
PRINTS
PR00807
46 63 18 1.60E-83
IPR018082
PRINTS
PR00807
70 95 26 1.60E-83
IPR018082
SMART
SM00656
98 295 198 1.10E-101
IPR002022
Pfam
PF00544
106 287 182 1.30E-20
IPR002022
PRINTS
PR00807
106 122 17 1.60E-83
IPR018082
PRINTS
PR00807
170 191 22 1.60E-83
IPR018082
PRINTS
PR00807
250 269 20 1.60E-83
IPR018082
PRINTS
PR00807
272 291 20 1.60E-83
IPR018082
PRINTS
PR00807
314 338 25 1.60E-83
IPR018082
PRINTS
PR00807
343 366 24 1.60E-83
IPR018082

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj6g3v0108680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0108680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.