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Lj6g3v0217170.2

Overview

Field Value
Gene ID Lj6g3v0217170
Transcript ID Lj6g3v0217170.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356547583|ref|XP_003542190.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF009328
4 497 494 1.00E-157
IPR011192
PANTHER
PTHR13271:SF44
30 497 468 1.80E-219 –
PANTHER
PTHR13271
30 497 468 1.80E-219 –
SUPERFAMILY
SSF82199
69 316 248 2.75E-53 –
Gene3D
G3DSA:3.90.1410.10
70 315 246 7.60E-59 –
SMART
SM00317
85 307 223 1.80E-14
IPR001214
ProSiteProfiles
PS50280
85 301 217 12.423
IPR001214
Pfam
PF00856
97 301 205 4.50E-17
IPR001214
Gene3D
G3DSA:3.90.1420.10
320 485 166 1.60E-18
IPR015353
SUPERFAMILY
SSF81822
331 498 168 3.92E-23
IPR015353
Pfam
PF09273
335 467 133 1.00E-17
IPR015353

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of
GO:0030785
Molecular function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj6g3v0217170.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0217170.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.