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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0227590 |
| Transcript ID | Lj6g3v0227590.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein GPR107-like [Cicer arietinum] gi|502134274|ref|XP_004502059.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 1 | 29 | 29 | – | – | |
| SignalP | 1 | 29 | 29 | – | – | |
| TMHMM | 10 | 29 | 20 | – | – | |
| Phobius | 12 | 23 | 12 | – | – | |
| Phobius | 24 | 29 | 6 | – | – | |
| PANTHER | 26 | 410 | 385 | 5.80E-297 | ||
| PANTHER | 26 | 410 | 385 | 5.80E-297 | – | |
| Phobius | 30 | 178 | 149 | – | – | |
| Pfam | 133 | 409 | 277 | 4.50E-49 | ||
| TMHMM | 176 | 198 | 23 | – | – | |
| Phobius | 179 | 199 | 21 | – | – | |
| Phobius | 200 | 205 | 6 | – | – | |
| TMHMM | 203 | 225 | 23 | – | – | |
| Phobius | 206 | 224 | 19 | – | – | |
| Phobius | 225 | 243 | 19 | – | – | |
| Phobius | 244 | 270 | 27 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Phobius | 271 | 281 | 11 | – | – | |
| Phobius | 282 | 300 | 19 | – | – | |
| Phobius | 301 | 311 | 11 | – | – | |
| Phobius | 312 | 334 | 23 | – | – | |
| TMHMM | 317 | 336 | 20 | – | – | |
| Phobius | 335 | 361 | 27 | – | – | |
| TMHMM | 356 | 378 | 23 | – | – | |
| Phobius | 362 | 380 | 19 | – | – | |
| Phobius | 381 | 385 | 5 | – | – | |
| Phobius | 386 | 406 | 21 | – | – | |
| TMHMM | 388 | 407 | 20 | – | – | |
| Phobius | 407 | 410 | 4 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v0227590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0227590.1, powered by CORGI.
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