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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0291950 |
| Transcript ID | Lj6g3v0291950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Glycine max] gi|356538057|ref|XP_003537521.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 485 | 468 | 0 | – | |
| PANTHER | 18 | 485 | 468 | 0 | – | |
| ProSiteProfiles | 40 | 70 | 31 | 7.026 | ||
| Pfam | 45 | 66 | 22 | 0.0017 | ||
| ProSiteProfiles | 71 | 105 | 35 | 8.276 | ||
| ProSiteProfiles | 106 | 142 | 37 | 5.207 | ||
| ProSiteProfiles | 143 | 173 | 31 | 5.952 | ||
| ProSiteProfiles | 174 | 208 | 35 | 10.413 | ||
| TIGRFAM | 176 | 200 | 25 | 8.10E-05 | ||
| Pfam | 176 | 200 | 25 | 8.70E-06 | ||
| Gene3D | 185 | 205 | 21 | 2.10E-06 | ||
| TIGRFAM | 208 | 237 | 30 | 5.80E-05 | ||
| Pfam | 208 | 237 | 30 | 1.50E-04 | ||
| ProSiteProfiles | 209 | 239 | 31 | 6.456 | ||
| ProSiteProfiles | 241 | 275 | 35 | 5.514 | ||
| ProSiteProfiles | 276 | 306 | 31 | 6.708 | ||
| TIGRFAM | 281 | 309 | 29 | 0.0022 | ||
| Gene3D | 305 | 460 | 156 | 2.10E-06 | ||
| Pfam | 306 | 354 | 49 | 1.10E-11 | ||
| ProSiteProfiles | 307 | 341 | 35 | 11.301 | ||
| TIGRFAM | 309 | 343 | 35 | 5.60E-06 | ||
| ProSiteProfiles | 342 | 377 | 36 | 8.418 | ||
| TIGRFAM | 344 | 378 | 35 | 2.60E-04 | ||
| ProSiteProfiles | 378 | 412 | 35 | 8.868 | ||
| Pfam | 382 | 405 | 24 | 0.0099 | ||
| ProSiteProfiles | 444 | 478 | 35 | 6.423 | ||
| Pfam | 481 | 604 | 124 | 1.30E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v0291950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0291950.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.