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Lj6g3v0328460.1

Overview

Field	Value
Gene ID	Lj6g3v0328460
Transcript ID	Lj6g3v0328460.1
Lotus japonicus genome version	MG20 v3.0
Description	Uncharacterized protein TCM_037260 [Theobroma cacao] gi\|508782602\|gb\|EOY29858.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR15660:SF1 View details on PTHR15660:SF1 Search for proteins/transripts with this domain View external data on PTHR15660:SF1	14	155	142	1.40E-63	–
PANTHER	PTHR15660 View details on PTHR15660 Search for proteins/transripts with this domain View external data on PTHR15660	14	155	142	1.40E-63	IPR026126 Show description in modal box View details on IPR026126 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53300 View details on SSF53300 Search for proteins/transripts with this domain View external data on SSF53300	28	146	119	5.34E-05	IPR002035 Show description in modal box View details on IPR002035 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045739 View details of GO:0045739 AmiGO InterPro QuickGO	Biological process	Positive regulation of DNA repair	Any process that activates or increases the frequency, rate or extent of DNA repair.	Subterm of View details of GO:0006282 View details of GO:0051054 View details of GO:2001022 Positively regulates View details of GO:0006281
GO:0070531 View details of GO:0070531 AmiGO InterPro QuickGO	Cellular component	BRCA1-A complex	A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites.	Subterm of View details of GO:0032991 View details of GO:0044428
GO:0070552 View details of GO:0070552 AmiGO InterPro QuickGO	Cellular component	BRISC complex	A protein complex that contains the FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and MERIT40/NBA1 proteins, and specifically cleaves K63-linked polyubiquitin chains.	Subterm of View details of GO:0032991 View details of GO:0044428

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj6g3v0328460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0328460.1, powered by CORGI.

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