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Lj6g3v0437300.2

Overview

Field Value
Gene ID Lj6g3v0437300
Transcript ID Lj6g3v0437300.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
11 235 225 4.30E-30 –
ProSiteProfiles
PS50181
19 66 48 10.319
IPR001810
Gene3D
G3DSA:3.80.10.10
20 253 234 7.20E-35
IPR032675
Pfam
PF12937
22 68 47 9.00E-09
IPR001810
SUPERFAMILY
SSF52047
49 251 203 7.06E-19 –
SMART
SM00367
91 114 24 490
IPR006553
SMART
SM00367
115 140 26 1.6
IPR006553
SMART
SM00367
195 219 25 45
IPR006553
SMART
SM00367
220 243 24 610
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj6g3v0437300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0437300.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.