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Lj6g3v0540630.1

Overview

Field Value
Gene ID Lj6g3v0540630
Transcript ID Lj6g3v0540630.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
3 193 191 0.005 –
PANTHER
PTHR24073:SF562
8 225 218 6.10E-170 –
PANTHER
PTHR24073
8 225 218 6.10E-170 –
Gene3D
G3DSA:3.40.50.300
12 223 212 3.90E-72
IPR027417
ProSiteProfiles
PS51419
13 223 211 36.458 –
SUPERFAMILY
SSF52540
14 186 173 8.66E-60
IPR027417
CDD
cd01868
15 179 165 2.33E-122 –
SMART
SM00173
15 181 167 2.60E-28 –
TIGRFAM
TIGR00231
17 174 158 1.50E-37
IPR005225
PRINTS
PR00449
18 39 22 1.50E-41 –
SMART
SM00175
18 181 164 4.00E-109 –
Pfam
PF00071
19 179 161 1.50E-62
IPR001806
SMART
SM00174
20 177 158 6.80E-11 –
SMART
SM00176
23 221 199 7.40E-07 –
PRINTS
PR00449
41 57 17 1.50E-41 –
PRINTS
PR00449
59 81 23 1.50E-41 –
PRINTS
PR00449
121 134 14 1.50E-41 –
PRINTS
PR00449
156 178 23 1.50E-41 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v0540630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0540630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.