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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0657890 |
| Transcript ID | Lj6g3v0657890.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max] gi|356540116|ref|XP_003538536.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| SUPERFAMILY | 10 | 431 | 422 | 6.02E-105 | ||
| Gene3D | 11 | 32 | 22 | 2.70E-43 | ||
| Pfam | 11 | 380 | 370 | 1.40E-98 | ||
| PRINTS | 12 | 30 | 19 | 3.90E-07 | ||
| PANTHER | 13 | 490 | 478 | 0 | – | |
| Phobius | 13 | 17 | 5 | – | – | |
| CDD | 13 | 391 | 379 | 9.79E-112 | ||
| PANTHER | 13 | 490 | 478 | 0 | ||
| Phobius | 18 | 669 | 652 | – | – | |
| Gene3D | 37 | 70 | 34 | 5.40E-25 | ||
| SMART | 88 | 343 | 256 | 4.00E-77 | ||
| ProSitePatterns | 125 | 139 | 15 | – | ||
| PRINTS | 130 | 139 | 10 | 3.90E-07 | ||
| Gene3D | 174 | 288 | 115 | 5.40E-25 | ||
| PRINTS | 207 | 223 | 17 | 3.90E-07 | ||
| Gene3D | 289 | 394 | 106 | 2.70E-43 | ||
| PRINTS | 305 | 319 | 15 | 3.90E-07 | ||
| PANTHER | 518 | 629 | 112 | 0 | ||
| PANTHER | 518 | 629 | 112 | 0 | – | |
| MobiDBLite | 631 | 669 | 39 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase activity | Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. | ||
| Molecular function | DNA topoisomerase type I activity | Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj6g3v0657890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0657890.1, powered by CORGI.
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