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Lj6g3v0670130.1

Overview

Field	Value
Gene ID	Lj6g3v0670130
Transcript ID	Lj6g3v0670130.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: RNA-binding protein pno1-like [Glycine max] gi\|356566309\|ref\|XP_003551375.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	29	29	–	–
PANTHER	PTHR12826 View details on PTHR12826 Search for proteins/transripts with this domain View external data on PTHR12826	10	220	211	9.80E-141	–
SMART	SM00322 View details on SM00322 Search for proteins/transripts with this domain View external data on SM00322	125	198	74	4.00E-05	IPR004087 Show description in modal box View details on IPR004087 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54791 View details on SSF54791 Search for proteins/transripts with this domain View external data on SSF54791	125	219	95	7.75E-20	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.1370.10 View details on G3DSA:3.30.1370.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.1370.10	126	212	87	9.40E-15	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00105 View details on cd00105 Search for proteins/transripts with this domain View external data on cd00105	145	191	47	5.07E-04	–
Pfam	PF00013 View details on PF00013 Search for proteins/transripts with this domain View external data on PF00013	146	193	48	2.60E-04	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v0670130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0670130.1, powered by CORGI.

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