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Lj6g3v0792120.2

Overview

Field Value
Gene ID Lj6g3v0792120
Transcript ID Lj6g3v0792120.2
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356527124|ref|XP_003532163.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24009
2 511 510 4.00E-262 –
PANTHER
PTHR24009:SF4
2 511 510 4.00E-262 –
SUPERFAMILY
SSF90229
155 182 28 6.75E-05
IPR000571
Gene3D
G3DSA:4.10.1000.10
155 182 28 3.80E-05
IPR000571
ProSiteProfiles
PS50103
156 183 28 14.54
IPR000571
Pfam
PF00642
159 182 24 2.30E-04
IPR000571
Pfam
PF12872
207 284 78 2.10E-10
IPR025605
ProSiteProfiles
PS51644
207 290 84 11.699
IPR025605
ProSiteProfiles
PS50102
308 383 76 11.008
IPR000504
SMART
SM00360
309 379 71 7.40E-08
IPR000504
CDD
cd12458
310 379 70 6.85E-35 –
Gene3D
G3DSA:3.30.70.330
318 386 69 1.00E-11
IPR012677
SUPERFAMILY
SSF54928
319 397 79 2.71E-13
IPR012677
Pfam
PF00076
319 374 56 1.70E-07
IPR000504
Coils
Coil
430 450 21 – –
MobiDBLite
mobidb-lite
466 489 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj6g3v0792120.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0792120.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.