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Lj6g3v0869180.1

Overview

Field Value
Gene ID Lj6g3v0869180
Transcript ID Lj6g3v0869180.1
Lotus japonicus genome version MG20 v3.0
Description Transcription factor [Medicago truncatula] gi|357459689|ref|XP_003600125.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
18 49 32 – –
PANTHER
PTHR10641
20 225 206 5.60E-111 –
PANTHER
PTHR10641:SF475
20 225 206 5.60E-111 –
ProSiteProfiles
PS51294
44 96 53 16.941
IPR017930
SUPERFAMILY
SSF46689
46 143 98 5.24E-30
IPR009057
SMART
SM00717
48 98 51 9.60E-14
IPR001005
Pfam
PF00249
49 96 48 1.40E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
50 103 54 5.30E-23
IPR009057
CDD
cd00167
51 96 46 2.92E-10 –
ProSiteProfiles
PS51294
97 151 55 24.545
IPR017930
SMART
SM00717
101 149 49 1.10E-15
IPR001005
Pfam
PF00249
102 145 44 5.20E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
104 150 47 5.60E-25
IPR009057
CDD
cd00167
104 145 42 1.80E-11 –
MobiDBLite
mobidb-lite
153 259 107 – –
PANTHER
PTHR10641
503 527 25 5.60E-111 –
PANTHER
PTHR10641:SF475
503 527 25 5.60E-111 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v0869180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0869180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.