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Lj6g3v0872240.1

Overview

Field Value
Gene ID Lj6g3v0872240
Transcript ID Lj6g3v0872240.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 107 107 – –
MobiDBLite
mobidb-lite
1 25 25 – –
PANTHER
PTHR19957
14 127 114 1.10E-57 –
PANTHER
PTHR19957:SF111
14 127 114 1.10E-57 –
SMART
SM00397
31 98 68 5.50E-07
IPR000727
SUPERFAMILY
SSF58038
34 98 65 9.16E-14 –
ProSiteProfiles
PS50192
36 98 63 12.771
IPR000727
Gene3D
G3DSA:1.20.5.110
38 100 63 2.30E-17 –
CDD
cd15841
39 96 58 4.42E-13 –
ProSitePatterns
PS00914
42 81 40 –
IPR006012
Pfam
PF05739
73 124 52 2.10E-09
IPR000727
Coils
Coil
74 94 21 – –
Phobius
TRANSMEMBRANE
108 127 20 – –
TMHMM
TMhelix
108 127 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
128 128 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005484
Molecular function SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj6g3v0872240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0872240.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.