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Lj6g3v0959380.1

Overview

Field Value
Gene ID Lj6g3v0959380
Transcript ID Lj6g3v0959380.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein TANC1-like [Cicer arietinum] gi|502166647|ref|XP_004513946.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24193:SF83
14 148 135 1.30E-81 –
PANTHER
PTHR24193
14 148 135 1.30E-81 –
SUPERFAMILY
SSF48403
16 144 129 6.13E-36
IPR020683
Gene3D
G3DSA:1.25.40.20
18 136 119 3.50E-34
IPR020683
ProSiteProfiles
PS50297
19 150 132 34.482
IPR020683
Pfam
PF13637
22 73 52 1.50E-09 –
CDD
cd00204
23 138 116 1.50E-33 –
SMART
SM00248
52 81 30 8.50E-08
IPR002110
ProSiteProfiles
PS50088
52 84 33 14.452
IPR002110
PRINTS
PR01415
53 68 16 8.90E-08
IPR002110
Pfam
PF13857
77 126 50 8.30E-12 –
ProSiteProfiles
PS50088
85 117 33 13.25
IPR002110
SMART
SM00248
85 114 30 5.60E-07
IPR002110
PRINTS
PR01415
101 115 15 8.90E-08
IPR002110
SMART
SM00248
118 147 30 790
IPR002110

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj6g3v0959380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0959380.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.