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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1038760 |
| Transcript ID | Lj6g3v1038760.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera] gi|225441828|ref|XP_002278166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 13 | 49 | 37 | – | – | |
| PANTHER | 15 | 106 | 92 | 1.10E-223 | – | |
| Gene3D | 64 | 182 | 119 | 1.80E-07 | ||
| ProSiteProfiles | 64 | 98 | 35 | 8.374 | ||
| ProSiteProfiles | 165 | 199 | 35 | 7.848 | ||
| Pfam | 168 | 196 | 29 | 0.0083 | ||
| PANTHER | 170 | 645 | 476 | 1.10E-223 | – | |
| ProSiteProfiles | 235 | 265 | 31 | 7.41 | ||
| Gene3D | 238 | 297 | 60 | 1.80E-07 | ||
| Pfam | 240 | 266 | 27 | 0.056 | ||
| ProSiteProfiles | 266 | 300 | 35 | 12.419 | ||
| TIGRFAM | 268 | 298 | 31 | 2.40E-07 | ||
| Pfam | 268 | 297 | 30 | 5.60E-09 | ||
| ProSiteProfiles | 303 | 337 | 35 | 6.193 | ||
| ProSiteProfiles | 338 | 368 | 31 | 7.783 | ||
| Pfam | 343 | 368 | 26 | 1.1 | ||
| Pfam | 369 | 416 | 48 | 1.40E-08 | ||
| ProSiteProfiles | 369 | 404 | 36 | 11.97 | ||
| TIGRFAM | 371 | 405 | 35 | 3.00E-05 | ||
| ProSiteProfiles | 405 | 439 | 35 | 6.051 | ||
| ProSiteProfiles | 440 | 470 | 31 | 7.695 | ||
| Pfam | 445 | 470 | 26 | 0.074 | ||
| ProSiteProfiles | 471 | 505 | 35 | 8.616 | ||
| Pfam | 473 | 501 | 29 | 0.072 | ||
| ProSiteProfiles | 507 | 537 | 31 | 5.261 | ||
| Gene3D | 568 | 608 | 41 | 1.80E-07 | ||
| ProSiteProfiles | 604 | 638 | 35 | 8.199 | ||
| Pfam | 641 | 762 | 122 | 2.30E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v1038760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1038760.1, powered by CORGI.
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