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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1038860 |
| Transcript ID | Lj6g3v1038860.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Cicer arietinum] gi|502134175|ref|XP_004502026.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 53 | 181 | 129 | 7.60E-26 | ||
| SUPERFAMILY | 54 | 186 | 133 | 6.54E-41 | ||
| ProSiteProfiles | 55 | 180 | 126 | 39.287 | ||
| CDD | 57 | 180 | 124 | 2.77E-38 | – | |
| SMART | 57 | 161 | 105 | 8.30E-17 | ||
| Pfam | 62 | 181 | 120 | 9.60E-18 | ||
| PANTHER | 191 | 531 | 341 | 5.70E-132 | – | |
| PANTHER | 191 | 531 | 341 | 5.70E-132 | – | |
| SUPERFAMILY | 195 | 552 | 358 | 1.96E-97 | – | |
| CDD | 198 | 526 | 329 | 2.00E-165 | – | |
| Pfam | 200 | 521 | 322 | 2.60E-46 | ||
| ProSiteProfiles | 200 | 524 | 325 | 40.275 | ||
| ProSitePatterns | 201 | 216 | 16 | – | ||
| Gene3D | 313 | 385 | 73 | 2.00E-30 | – | |
| ProSitePatterns | 440 | 457 | 18 | – | ||
| Coils | 533 | 564 | 32 | – | – | |
| Pfam | 625 | 877 | 253 | 8.90E-76 | ||
| Pfam | 887 | 1097 | 211 | 4.10E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj6g3v1038860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1038860.1, powered by CORGI.
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