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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1055630 |
| Transcript ID | Lj6g3v1055630.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RNA helicase family protein isoform 1 [Theobroma cacao] gi|508774751|gb|EOY22007.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 636 | 636 | 0 | – | |
| PANTHER | 1 | 636 | 636 | 0 | – | |
| SMART | 1 | 181 | 181 | 3.50E-30 | ||
| Gene3D | 3 | 156 | 154 | 1.00E-54 | ||
| SUPERFAMILY | 4 | 521 | 518 | 1.81E-130 | ||
| ProSiteProfiles | 9 | 172 | 164 | 19.833 | ||
| CDD | 16 | 154 | 139 | 9.00E-31 | – | |
| CDD | 186 | 336 | 151 | 1.46E-11 | – | |
| ProSiteProfiles | 195 | 370 | 176 | 17.052 | ||
| Gene3D | 200 | 341 | 142 | 1.30E-12 | ||
| Pfam | 202 | 329 | 128 | 3.30E-14 | ||
| SMART | 221 | 329 | 109 | 3.80E-18 | ||
| SMART | 390 | 482 | 93 | 1.20E-33 | ||
| Pfam | 391 | 481 | 91 | 2.60E-21 | ||
| Coils | 508 | 528 | 21 | – | – | |
| Pfam | 523 | 616 | 94 | 2.10E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of Lj6g3v1055630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1055630.1, powered by CORGI.
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