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Lj6g3v1065910.1

Overview

Field Value
Gene ID Lj6g3v1065910
Transcript ID Lj6g3v1065910.1
Lotus japonicus genome version MG20 v3.0
Description F-box family protein [Medicago truncatula] gi|357483733|ref|XP_003612153.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31790
6 133 128 1.50E-68 –
ProSiteProfiles
PS50181
34 79 46 11.935
IPR001810
Pfam
PF00646
36 76 41 2.50E-09
IPR001810
Gene3D
G3DSA:1.20.1280.50
37 76 40 2.60E-08 –
SUPERFAMILY
SSF81383
37 88 52 2.22E-12
IPR001810
SMART
SM00256
40 79 40 6.70E-06
IPR001810
PANTHER
PTHR31790
167 458 292 1.50E-68 –
TIGRFAM
TIGR01640
182 414 233 4.00E-29
IPR017451
Pfam
PF07734
289 383 95 1.00E-05
IPR006527

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1065910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1065910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.