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Lj6g3v1078560.1

Overview

Field Value
Gene ID Lj6g3v1078560
Transcript ID Lj6g3v1078560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: outer membrane lipoprotein blc-like [Cicer arietinum] gi|502149930|ref|XP_004507714.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10612
1 182 182 5.20E-103 –
PANTHER
PTHR10612:SF19
1 182 182 5.20E-103 –
PIRSF
PIRSF036893
1 170 170 5.80E-50
IPR022271
Gene3D
G3DSA:2.40.128.20
4 161 158 2.60E-49
IPR012674
SUPERFAMILY
SSF50814
4 166 163 1.25E-41
IPR011038
ProSitePatterns
PS00213
11 24 14 –
IPR022272
PRINTS
PR01171
12 26 15 1.20E-05
IPR002446
Pfam
PF08212
12 159 148 2.00E-47
IPR000566
PRINTS
PR01171
49 58 10 1.20E-05
IPR002446
PRINTS
PR01171
121 132 12 1.20E-05
IPR002446
PRINTS
PR01171
148 158 11 1.20E-05
IPR002446
MobiDBLite
mobidb-lite
153 174 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1078560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1078560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.