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IPR012674 is a Calycin.
<p>Calycins form a large protein superfamily that share similar β-barrel structures. Calycins can be divided into families that include lipocalins, fatty acid binding proteins, triabin, and thrombin inhibitor [[cite:PUB00014136]]. Of these families, the lipocalin family ([interpro:IPR002345]) is the largest and functionally the most diverse. Lipocalins are extracellular proteins that share several common recognition properties such as ligand binding, receptor binding and the formation of complexes with other macromolecules. Lipocalins include the retinol binding protein, lipocalin allergen, aphrodisin (a sex hormone), alpha-2U-globulin, prostaglandin D synthase, beta-lactoglobulin, bilin-binding protein, and the nitrophorins [[cite:PUB00014141], [cite:PUB00014138], [cite:PUB00014139], [cite:PUB00014140]]. Bacterial hypothetical proteins YodA from Escherichia coli and YwiB from Bacillus subtilis share a similar calycin β-barrel structure. Part of the YodA hypothetical protein has a calycin-like structure [[cite:PUB00015733]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: outer membrane lipoprotein blc-like [Cicer arietinum] gi|502149930|ref|XP_004507714.1| | 15 | ||
| – | Violaxanthin de-epoxidase, chloroplastic-like [Glycine max] gi|359806202|ref|NP_001240949.1| | 14 | ||
| – | Domain of Uncharacterized protein function isoform 1 [Theobroma cacao] gi|508711658|gb|EOY03555.1| | 9 | ||
| – | WRKY transcription factor 11-2 [Dimocarpus longan] gi|346455931|gb|AEO31475.1| | 8 | ||
| – | PREDICTED: outer membrane lipoprotein blc-like [Cicer arietinum] gi|502149930|ref|XP_004507714.1| | 15 | ||
| – | Apolipoprotein D; TAIR: AT3G47860.1 chloroplastic lipocalin; Swiss-Prot: sp|Q9STS7|CHL_ARATH Chloroplastic lipocalin; TrEMBL-Plants: tr|I3S940|I3S940_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0034700 | 11 | ||
| – | Violaxanthin de-epoxidase; TAIR: AT1G08550.1 non-photochemical quenching 1; Swiss-Prot: sp|Q9SM43|VDE_SPIOL Violaxanthin de-epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151TXT8|A0A151TXT8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0787600 | 13 | ||
| – | Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598); TAIR: AT3G29185.1 glutamate NMDA receptor subunit epsilon-1, putative (DUF3598); Swiss-Prot: sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A; TrEMBL-Plants: tr|I3SW85|I3SW85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262300 | 9 | ||
| – | Dihydroorotate dehydrogenase (Quinone); TAIR: AT2G44760.1 dihydroorotate dehydrogenase (DUF3598); Swiss-Prot: sp|Q5PRF0|HTR5A_MOUSE HEAT repeat-containing protein 5A; TrEMBL-Plants: tr|A0A0B2S2I5|A0A0B2S2I5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0068300 | 4 | ||
| – | Temperature-induced lipocalin; TAIR: AT5G58070.1 temperature-induced lipocalin; Swiss-Prot: sp|Q9FGT8|TIL_ARATH Temperature-induced lipocalin-1; TrEMBL-Plants: tr|I3T3W6|I3T3W6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0285700 | 14 | ||
| – | Violaxanthin de-epoxidase-like protein; TAIR: AT2G21860.1 violaxanthin de-epoxidase-like protein; Swiss-Prot: sp|Q40593|VDE_TOBAC Violaxanthin de-epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S1H5|A0A0B2S1H5_GLYSO Violaxanthin de-epoxidase, chloroplastic; Found in the gene: LotjaGi4g1v0404300 | 8 | ||
| – | Temperature-induced lipocalin; TAIR: AT5G58070.1 temperature-induced lipocalin; Swiss-Prot: sp|Q9FGT8|TIL_ARATH Temperature-induced lipocalin-1; TrEMBL-Plants: tr|I3TAJ2|I3TAJ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0205600 | 14 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 8.33 |