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Lj6g3v1089020.1

Overview

Field	Value
Gene ID	Lj6g3v1089020
Transcript ID	Lj6g3v1089020.1
Related isoforms 1	Lj6g3v1089020.2
Lotus japonicus genome version	MG20 v3.0
Description	Dual specificity protein kinase pyk2 [Medicago truncatula] gi\|357478457\|ref\|XP_003609514.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	135	159	25	–	–
PANTHER	PTHR31066 View details on PTHR31066 Search for proteins/transripts with this domain View external data on PTHR31066	159	294	136	2.10E-57	–
CDD	cd06410 View details on cd06410 Search for proteins/transripts with this domain View external data on cd06410	166	264	99	9.31E-50	–
SMART	SM00666 View details on SM00666 Search for proteins/transripts with this domain View external data on SM00666	177	266	90	1.00E-28	IPR000270 Show description in modal box View details on IPR000270 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54277 View details on SSF54277 Search for proteins/transripts with this domain View external data on SSF54277	178	269	92	1.34E-22	–
Pfam	PF00564 View details on PF00564 Search for proteins/transripts with this domain View external data on PF00564	179	265	87	1.90E-19	IPR000270 Show description in modal box View details on IPR000270 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.10.20.240 View details on G3DSA:3.10.20.240 Search for proteins/transripts with this domain View external data on G3DSA:3.10.20.240	184	247	64	8.50E-06	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	372	394	23	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 34

Expression data

Expression pattern

Expression pattern of Lj6g3v1089020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1089020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.