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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31066
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.037s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066489.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 23418810 23419502 +
1 domain prediction
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Lj0g3v0190669.1
n.a. n.a. chr0 93208877 93212663 -
1 domain prediction
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Lj0g3v0240859.1
n.a. PB1 domain-containing protein [Arabidopsis thaliana] gi|15237703|ref|NP_201248.1| chr0 125019440 125020915 +
1 domain prediction
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Lj0g3v0261769.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 135661697 135664374 +
1 domain prediction
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Lj0g3v0261769.2
n.a. Os01g0139200 [Oryza sativa Japonica Group] gi|297596074|ref|NP_001041976.2| chr0 135661697 135663278 +
1 domain prediction
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Lj0g3v0315899.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952404 164954158 +
1 domain prediction
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Lj0g3v0315899.2
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952458 164953006 +
1 domain prediction
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Lj0g3v0316199.1
n.a. PB1 domain-containing protein [Nicotiana benthamiana] gi|213868273|gb|ACJ54183.1| chr0 165100176 165101508 +
1 domain prediction
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Lj0g3v0329509.1
n.a. n.a. chr0 172267892 172271697 +
1 domain prediction
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Lj0g3v0329519.1
n.a. AT2G01190 [Arabidopsis thaliana] gi|227206306|dbj|BAH57208.1| chr0 172268072 172271697 -
1 domain prediction
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Lj1g3v3466120.1
n.a. n.a. chr1 40332056 40336474 +
1 domain prediction
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Lj2g3v0694630.1
n.a. PREDICTED: probable serine/threonine-protein kinase tsuA-like [Cicer arietinum] gi|502163583|ref|XP_004512883.1| chr2 11122553 11125443 +
1 domain prediction
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Lj2g3v0694630.2
n.a. PREDICTED: probable serine/threonine-protein kinase tsuA-like [Cicer arietinum] gi|502163583|ref|XP_004512883.1| chr2 11122553 11125443 +
1 domain prediction
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Lj2g3v2135880.1
n.a. PB1 domain-containing protein [Nicotiana benthamiana] gi|213868273|gb|ACJ54183.1| chr2 32286853 32288806 -
1 domain prediction
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Lj4g3v0409450.1
n.a. PB1 domain-containing protein [Arabidopsis thaliana] gi|15237703|ref|NP_201248.1| chr4 5201234 5203087 -
1 domain prediction
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Lj4g3v0435310.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18412822|ref|NP_567290.1| chr4 5734083 5735793 -
1 domain prediction
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Lj4g3v1438590.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr4 22260913 22262071 -
1 domain prediction
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Lj4g3v2080380.2
n.a. Protein kinase-like protein [Medicago truncatula] gi|357479749|ref|XP_003610160.1| chr4 28589969 28593542 -
1 domain prediction
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Lj5g3v2179810.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr5 31319192 31322435 +
1 domain prediction
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Lj5g3v2179820.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr5 31319192 31321172 +
1 domain prediction
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Lj6g3v1089020.1
n.a. Dual specificity protein kinase pyk2 [Medicago truncatula] gi|357478457|ref|XP_003609514.1| chr6 13179981 13187938 -
1 domain prediction
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Lj6g3v2285290.1
n.a. octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297795759|ref|XP_002865764.1| chr6 26851461 26855896 +
1 domain prediction
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LotjaGi1g1v0133900_LC.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G09620.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A; TrEMBL-Plants: tr|A0A0L9UXI5|A0A0L9UXI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0133900_LC LjG1.1_chr1 21541401 21544315 -
1 domain prediction
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LotjaGi1g1v0134100.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G64430.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q6C2X0|KAPR_YARLI cAMP-dependent protein kinase regulatory subunit; TrEMBL-Plants: tr|A0A0L9UXI5|A0A0L9UXI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134100 LjG1.1_chr1 21578120 21580055 +
1 domain prediction
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LotjaGi1g1v0196400.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196400 LjG1.1_chr1 39508041 39510958 +
1 domain prediction
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LotjaGi1g1v0196400.2
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196400 LjG1.1_chr1 39508041 39511010 +
1 domain prediction
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LotjaGi2g1v0202200.1
n.a. Octicosapeptide/phox/Bem1p family protein; TAIR: AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein; TrEMBL-Plants: tr|I1L491|I1L491_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0202200 LjG1.1_chr2 64223913 64227911 +
1 domain prediction
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LotjaGi2g1v0238300.1
n.a. Octicosapeptide/Phox/Bem1p family protein, putative; TAIR: AT5G16220.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|O46669|SCNAA_CANLF Sodium channel protein type 10 subunit alpha; TrEMBL-Plants: tr|A0A0L9T5J2|A0A0L9T5J2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0238300 LjG1.1_chr2 69900039 69902486 +
1 domain prediction
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LotjaGi2g1v0273600.1
n.a. Octicosapeptide/phox/Bem1p family protein; TAIR: AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175; TrEMBL-Plants: tr|I1NFP9|I1NFP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273600 LjG1.1_chr2 74496146 74505436 +
1 domain prediction
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LotjaGi2g1v0325100.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G26510.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|P27742|ACVS_EMENI N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase; TrEMBL-Plants: tr|A0A1J7ICN8|A0A1J7ICN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0325100 LjG1.1_chr2 79981910 79993157 +
1 domain prediction
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LotjaGi4g1v0042100.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G64430.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|P30376|1A02_GORGO Class I histocompatibility antigen, Gogo-A*0201 alpha chain; TrEMBL-Plants: tr|A0A0L9TL85|A0A0L9TL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0042100 LjG1.1_chr4 4974136 4976022 -
1 domain prediction
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LotjaGi4g1v0047700.1
n.a. Octicosapeptide/Phox/Bem1p; TAIR: AT4G05150.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q6XQC4|TMP_BPT1 Probable tape measure protein; TrEMBL-Plants: tr|V7CPR8|V7CPR8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0047700 LjG1.1_chr4 5734556 5736557 -
1 domain prediction
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LotjaGi4g1v0228700.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|P09217|KPCZ_RAT Protein kinase C zeta type; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0228700 LjG1.1_chr4 53848980 53850589 -
1 domain prediction
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LotjaGi5g1v0335800.1
n.a. Octicosapeptide/phox/Bem1p family protein; TAIR: AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175; TrEMBL-Plants: tr|A0A072VQ77|A0A072VQ77_MEDTR Octicosapeptide/phox/Bem1p family protein; Found in the gene: LotjaGi5g1v0335800 LjG1.1_chr5 65292772 65296141 +
1 domain prediction
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LotjaGi6g1v0347200.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G09620.2 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q8WZ42|TITIN_HUMAN Titin; TrEMBL-Plants: tr|A0A151S167|A0A151S167_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0347200 LjG1.1_chr6 66007359 66009788 +
1 domain prediction
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