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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00564
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 94 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.039s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3373110.1
LjNin nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr2 43039240 43042638 +
2 domain predictions
1 GO term
Lj0g3v0066489.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 23418810 23419502 +
2 domain predictions
1 GO term
Lj0g3v0175019.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr0 84473202 84476019 +
2 domain predictions
1 GO term
Lj0g3v0190669.1
n.a. n.a. chr0 93208877 93212663 -
2 domain predictions
1 GO term
Lj0g3v0240859.1
n.a. PB1 domain-containing protein [Arabidopsis thaliana] gi|15237703|ref|NP_201248.1| chr0 125019440 125020915 +
2 domain predictions
1 GO term
Lj0g3v0261769.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 135661697 135664374 +
2 domain predictions
1 GO term
Lj0g3v0261769.2
n.a. Os01g0139200 [Oryza sativa Japonica Group] gi|297596074|ref|NP_001041976.2| chr0 135661697 135663278 +
2 domain predictions
1 GO term
Lj0g3v0268659.1
n.a. Dual specificity protein kinase pyk2 [Medicago truncatula] gi|357478457|ref|XP_003609514.1| chr0 139103742 139111675 -
2 domain predictions
1 GO term
Lj0g3v0315899.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952404 164954158 +
2 domain predictions
1 GO term
Lj0g3v0315899.2
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952458 164953006 +
2 domain predictions
1 GO term
Lj0g3v0358659.1
n.a. nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr0 188832157 188835627 +
2 domain predictions
1 GO term
Lj1g3v1500470.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cicer arietinum] gi|502133303|ref|XP_004501712.1| chr1 17892236 17907543 +
2 domain predictions
1 GO term
Lj1g3v1500470.2
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356508821|ref|XP_003523152.1| chr1 17892661 17907543 +
2 domain predictions
1 GO term
Lj1g3v3466110.1
n.a. Os12g0594300 [Oryza sativa Japonica Group] gi|297613457|ref|NP_001067178.2| chr1 40325643 40337136 -
2 domain predictions
1 GO term
Lj1g3v3466120.1
n.a. n.a. chr1 40332056 40336474 +
2 domain predictions
1 GO term
Lj2g3v0694630.2
n.a. PREDICTED: probable serine/threonine-protein kinase tsuA-like [Cicer arietinum] gi|502163583|ref|XP_004512883.1| chr2 11122553 11125443 +
2 domain predictions
1 GO term
Lj2g3v2135880.1
n.a. PB1 domain-containing protein [Nicotiana benthamiana] gi|213868273|gb|ACJ54183.1| chr2 32286853 32288806 -
2 domain predictions
1 GO term
Lj2g3v2878430.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508720006|gb|EOY11903.1| chr2 37484110 37486925 +
2 domain predictions
1 GO term
Lj3g3v0339060.1
n.a. NIN-like protein 2 [Lotus japonicus] gi|33468532|emb|CAE30325.1| chr3 2754440 2761858 -
2 domain predictions
1 GO term
Lj3g3v0950610.1
n.a. protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain [Arabidopsis thaliana] gi|15219417|ref|NP_178075.1| chr3 12130820 12138240 -
2 domain predictions
1 GO term
Lj3g3v0950630.2
n.a. protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain [Arabidopsis thaliana] gi|15219417|ref|NP_178075.1| chr3 12141497 12149694 -
2 domain predictions
1 GO term
Lj3g3v1486980.1
n.a. Serine/threonine-protein kinase CTR1 [Triticum urartu] gi|474096205|gb|EMS55060.1| chr3 18901302 18910596 -
2 domain predictions
1 GO term
Lj3g3v1486980.2
n.a. Serine/threonine-protein kinase CTR1 [Triticum urartu] gi|474096205|gb|EMS55060.1| chr3 18901302 18910596 -
2 domain predictions
1 GO term
Lj3g3v3336070.1
n.a. PREDICTED: protein NLP8-like [Glycine max] gi|356541135|ref|XP_003539038.1| chr3 40548023 40554395 +
2 domain predictions
1 GO term
Lj4g3v0409450.1
n.a. PB1 domain-containing protein [Arabidopsis thaliana] gi|15237703|ref|NP_201248.1| chr4 5201234 5203087 -
2 domain predictions
1 GO term
Lj4g3v0435310.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18412822|ref|NP_567290.1| chr4 5734083 5735793 -
2 domain predictions
1 GO term
Lj4g3v1427520.1
n.a. JOKA2 [Nicotiana tabacum] gi|337732515|gb|AEI71779.1| chr4 22215028 22219154 -
2 domain predictions
1 GO term
Lj4g3v1438590.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr4 22260913 22262071 -
2 domain predictions
1 GO term
Lj4g3v2080380.1
n.a. Protein kinase-like protein [Medicago truncatula] gi|357479749|ref|XP_003610160.1| chr4 28585196 28592820 -
2 domain predictions
1 GO term
Lj4g3v2080380.2
n.a. Protein kinase-like protein [Medicago truncatula] gi|357479749|ref|XP_003610160.1| chr4 28589969 28593542 -
2 domain predictions
1 GO term
Lj4g3v2249010.1
n.a. MuDR family transposase isoform 1 [Theobroma cacao] gi|508715027|gb|EOY06924.1| chr4 30958394 30963343 +
2 domain predictions
1 GO term
Lj4g3v2298210.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr4 32095764 32099834 -
2 domain predictions
1 GO term
Lj4g3v2845100.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38007849 38011649 +
2 domain predictions
1 GO term
Lj4g3v2845100.3
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38010277 38011649 +
2 domain predictions
1 GO term
Lj5g3v0529120.1
n.a. heat shock protein 70 [Cucumis melo subsp]. melo] gi|307136298|gb|ADN34122.1| chr5 5897663 5902881 +
2 domain predictions
1 GO term
Lj5g3v1696950.1
n.a. Mitogen-activated protein kinase kinase kinase 13-A [Medicago truncatula] gi|357442709|ref|XP_003591632.1| chr5 24128534 24139008 -
2 domain predictions
1 GO term
Lj5g3v1999250.1
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356535865|ref|XP_003536463.1| chr5 28144721 28149391 -
2 domain predictions
1 GO term
Lj5g3v1999250.2
n.a. PREDICTED: protein NLP6-like [Glycine max] gi|356535865|ref|XP_003536463.1| chr5 28144721 28149391 -
2 domain predictions
1 GO term
Lj5g3v2179810.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr5 31319192 31322435 +
2 domain predictions
1 GO term
Lj5g3v2179820.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr5 31319192 31321172 +
2 domain predictions
1 GO term
Lj6g3v1089020.1
n.a. Dual specificity protein kinase pyk2 [Medicago truncatula] gi|357478457|ref|XP_003609514.1| chr6 13179981 13187938 -
2 domain predictions
1 GO term
Lj6g3v1093310.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr6 13317565 13321731 +
2 domain predictions
1 GO term
Lj6g3v2285290.1
n.a. octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297795759|ref|XP_002865764.1| chr6 26851461 26855896 +
2 domain predictions
1 GO term
LotjaGi1g1v0001500.1
n.a. Plant regulator RWP-RK family protein; TAIR: AT4G35270.1 Plant regulator RWP-RK family protein; Swiss-Prot: sp|Q7X9B9|NLP2_ARATH Protein NLP2; TrEMBL-Plants: tr|Q9S7B1|Q9S7B1_LOTJA Nodule inception protein; Found in the gene: LotjaGi1g1v0001500 LjG1.1_chr1 494119 498452 -
2 domain predictions
1 GO term
LotjaGi1g1v0133900_LC.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G09620.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A; TrEMBL-Plants: tr|A0A0L9UXI5|A0A0L9UXI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0133900_LC LjG1.1_chr1 21541401 21544315 -
2 domain predictions
1 GO term
LotjaGi1g1v0134100.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein; TAIR: AT5G64430.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|Q6C2X0|KAPR_YARLI cAMP-dependent protein kinase regulatory subunit; TrEMBL-Plants: tr|A0A0L9UXI5|A0A0L9UXI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134100 LjG1.1_chr1 21578120 21580055 +
2 domain predictions
1 GO term
LotjaGi1g1v0196400.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196400 LjG1.1_chr1 39508041 39510958 +
2 domain predictions
1 GO term
LotjaGi1g1v0196400.2
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196400 LjG1.1_chr1 39508041 39511010 +
2 domain predictions
1 GO term
LotjaGi1g1v0325800.1
n.a. CBS domain-containing protein; TAIR: AT3G52950.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3; TrEMBL-Plants: tr|G7J2M9|G7J2M9_MEDTR CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein; Found in the gene: LotjaGi1g1v0325800 LjG1.1_chr1 77930308 77937241 +
2 domain predictions
1 GO term
LotjaGi1g1v0337600.1
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|A0A0S3RFH2|A0A0S3RFH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337600 LjG1.1_chr1 79798520 79808486 +
2 domain predictions
1 GO term