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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1094860 |
| Transcript ID | Lj6g3v1094860.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Cicer arietinum] gi|502138308|ref|XP_004503357.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 23 | 20 | 0 | – | |
| PANTHER | 4 | 23 | 20 | 0 | – | |
| PANTHER | 49 | 339 | 291 | 0 | – | |
| PANTHER | 49 | 339 | 291 | 0 | – | |
| ProSiteProfiles | 102 | 136 | 35 | 7.837 | ||
| ProSiteProfiles | 137 | 171 | 35 | 5.514 | ||
| ProSiteProfiles | 172 | 202 | 31 | 7.541 | ||
| Pfam | 177 | 199 | 23 | 0.24 | ||
| ProSiteProfiles | 203 | 237 | 35 | 12.595 | ||
| Pfam | 203 | 247 | 45 | 8.00E-11 | ||
| TIGRFAM | 205 | 238 | 34 | 1.30E-07 | ||
| Gene3D | 206 | 234 | 29 | 1.60E-08 | ||
| ProSiteProfiles | 238 | 272 | 35 | 6.675 | ||
| ProSiteProfiles | 273 | 303 | 31 | 6.917 | ||
| Pfam | 278 | 300 | 23 | 0.053 | ||
| Gene3D | 302 | 356 | 55 | 1.60E-08 | ||
| ProSiteProfiles | 304 | 338 | 35 | 12.386 | ||
| Pfam | 304 | 347 | 44 | 5.10E-10 | ||
| TIGRFAM | 306 | 340 | 35 | 1.20E-06 | ||
| ProSiteProfiles | 339 | 373 | 35 | 6.982 | ||
| ProSiteProfiles | 374 | 404 | 31 | 5.821 | ||
| Pfam | 379 | 399 | 21 | 0.55 | ||
| ProSiteProfiles | 405 | 439 | 35 | 9.723 | ||
| Pfam | 409 | 430 | 22 | 0.16 | ||
| ProSiteProfiles | 475 | 505 | 31 | 5.459 | ||
| PANTHER | 476 | 785 | 310 | 0 | – | |
| PANTHER | 476 | 785 | 310 | 0 | – | |
| Gene3D | 478 | 526 | 49 | 1.60E-08 | ||
| ProSiteProfiles | 506 | 540 | 35 | 10.907 | ||
| Pfam | 506 | 553 | 48 | 3.80E-09 | ||
| TIGRFAM | 508 | 539 | 32 | 4.50E-06 | ||
| ProSiteProfiles | 576 | 606 | 31 | 7.3 | ||
| Pfam | 581 | 605 | 25 | 0.13 | ||
| Gene3D | 584 | 673 | 90 | 1.60E-08 | ||
| Pfam | 606 | 653 | 48 | 4.00E-11 | ||
| ProSiteProfiles | 607 | 641 | 35 | 12.101 | ||
| TIGRFAM | 609 | 642 | 34 | 4.50E-09 | ||
| ProSiteProfiles | 642 | 672 | 31 | 7.991 | ||
| ProSiteProfiles | 678 | 708 | 31 | 6.807 | ||
| Pfam | 682 | 705 | 24 | 0.045 | ||
| Gene3D | 708 | 743 | 36 | 1.60E-08 | ||
| ProSiteProfiles | 744 | 778 | 35 | 7.015 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1094860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1094860.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.